In recent years, scientists have begun to recognize that seemingly isolated rocks beneath the seafloor are a haven for microbial life. Biological activity in this subseafloor realm likely impacts ocean chemistry and the ocean’s critical capacity to store carbon and maintain the planet’s habitability. Our understanding of this activity, currently is in its infancy, should substantially expand thanks to the next Falkor mission.
On September 22, Falkor will depart Victoria, British Columbia with the ROPOS remotely operated vehicle and steam to the underwater volcano called Axial Seamount, about 575 kilometers to the southwest. There, a team will begin an unprecedented study of the microbes and viruses that live within the rocky layers beneath the seafloor.
Julie Huber at the Marine Biological Laboratory will lead the new collaboration with Schmidt Ocean Institute, which also involves Huber’s colleagues from University of Washington, NOAA Pacific Marine Environmental Laboratory, University of Massachusetts, Amherst, and J. Craig Venter Institute.
Unlike most of the ocean, the subseafloor environment does not directly receive organic matter derived from photosynthesis. The food webs in the subseafloor instead begin with microbes able to produce energy and food from chemicals and inorganic carbon, or chemosynthesis.
Some estimates suggest there could be up to ten times more microbial cells in the subseafloor than in the ocean itself. Yet, the associated potential for production of new carbon is rarely considered in traditional oceanographic models of carbon cycling or microbial food webs. That is because we know so little about this underexplored and potentially ubiquitous microbial habitat.
The functional consequences of an extensive population of microbes living in the subseafloor remains unknown, and we can’t yet say how these organisms interact with one another and influence the biogeochemistry of the oceans.
Microbes aren’t the whole story in the subseafloor. Viruses—organisms that are only able to survive within the living cells of a host—are likely plentiful there, although we know almost nothing about them. That’s despite the fact that viral infection of microbial cells can cause them to break up, or lyse, releasing carbon and other nutrients back into the subseafloor. In addition, through the infection process, viruses may also be important contributors of new genes to microbes, with significant historic effects on their evolution.
The lack of subseafloor research is in part because that realm is so difficult to access. But the water that travels within crustal layers and emerges at hydrothermal vent fields offers an accessible window. One well-known hotspot for such activity is Axial Seamount, a natural working laboratory that offers a range of vents with differing temperatures and chemistries.
Axial includes multiple spectacular “black smokers” chimneys. But the super heated, cloudy waters from these vents are too hot to support life, so they’ll serve only as references for the chemistry of the waters cycling through the otherwise inaccessible rocky layers below. The focus will instead be on collecting samples from the cooler surrounding vent sites because these waters contain the microbes and viruses that live in the rocky subsurface layers.
The team will be running a wide range of analyses and experiments using these samples, including identifying and quantifying microbes and viruses; determining what genes they contain—their gene repertoires; establishing microbial metabolic rates; and measuring microbial and viral chemical signatures.
Besides access, a key challenge of studying subseafloor microbes and viruses is maintaining the right temperature and pressure conditions where they live so that they can be studied. To do that, the team, with funding from the Marine Microbiology Initiative at the Gordon and Betty Moore Foundation (GBMF3297), will be using two specialized samplers that will be installed on ROPOS.
The Hydrothermal Fluid Particle Sampler will filter water samples to either collect vent fluids for chemical analyses and enrichment experiments on the ship, or it can be used to collect and preserve microbial samples at the seafloor for later genetic analyses. A Large Volume Water Sampler (LVWS) can take the huge, roughly 200-literhuge ~200-liter samples needed to get sufficient quantities of viruses to allow their manipulation and study.
The team will also collect samples from gushing hydrothermal vents using an isobaric gas-tight (IGT) sampler device that can be used in water temperatures up to 400°C. It is designed for work at vents, but was also used to sample the Deepwater Horizon spill’s seafloor outflow.
The team will collect samples at venting sites representing a set range of temperatures from about 12 to 15°C. One of the main goals with the microbial work will be to get direct measurements of which microbes from different sites are actively fixing inorganic carbon. This will involve incubating vent fluids with specially labeled inorganic carbon as a starting point for their chemosynthesis.
Among other work aboard Falkor will be “challenge” experiments where the team will estimates rates at which viruses are able to kill microbes to better understand what role viruses play in governing subseafloor carbon cycling.
By combining data from the full range of experiments and analyses, and working with researchers on shore, the team will begin developing a new model of microbial activity within subseafloor ecosystems. This will allow them to begin assessing the microbes’ impacts on carbon cycling to a degree never before possible.
The dives needed to accomplish this work will all be set against the spectacular backdrop of Axial Seamount, including hydrothermal vents with their unique species like tubeworms. We will be posting regular updates and photos from the team at the cruise blog (click on Cruise Log, upper left corner), and we will live stream all the ROPOS dives, so please follow along.
Support for research and technology development related to this expedition was provided by the National Science Foundation, the Marine Biological Laboratory, the University of Massachusetts, Amherst, the University of Washington, the J. Craig Venter Institute, and the Gordon and Betty Moore Foundation.
Final Cruise Report
Data Products Resulting from this Cruise
Shipboard chemistry analyses, and microbial and viral counts can be found at the Marine Biological Labratory (MBL) Josephine Bay Paul Center
Publications, presentations at scientific meetings, and research seminars based on this cruise:
Huber, Julie, Christopher K. Algar, Lisa Zeigler Allen, David A. Butterfield, Caroline S. Fortunato, James F. Holden, Benjamin I. Larson, Giora K. Proskurowski, Lucy C. Stewart, Begum C. Topҫuoḡlu, and Joseph J. Vallino. 2014, Investigating Microbes, Viruses, and Carbon Acroos Thermal and Chemical Gradients in the Subseafloor at Axial Seamount. Poster Presentation at Gordon Research Conference on Marine Microbiology, June 22-27, 2015, Waltham, MA, USA. View the poster here.